It would be great to know at what degree of knee bending you hear your knee click
Why does that matter ? It helps me in advising you what degree of knee flexion or extension you can avoid so you won't provoke the knee
Also , what kind of a runner are you? Marathon, Sprinter ? Helps me to understand the cause of the problem.
Now , why is there a clicking sound ? Could be ligament laxity , muscle weakness etc
Next Steps
What can you do ?
Stabilize ( the knee )before you mobilize ( the knee) .
Health Tips
Start training your Quadriceps as it helps stabilize the knee cap
Start with isometrics for the knee joint and gradually move to weight training .
Happy Recovery Runner !