Yes clicking and popping of tmj results in discomfort and at times pain in the ear.
Taking a proper course of treatment will help you eliminate the problem all together.
Next Steps
you can start by getting an x-ray for your joint .
followed by some hot and cold fermentation at the site ...that is near your ear .
Health Tips
try not to open your mouth wide enough to and have soft food items for at least 1 week . this will help reduce the load on your joint thereby helping your ear symptoms.