Uti from the past three months. Now.

I got UTI in November. and I have been taking a lot of antibiotics. I contracted infection from my husband.My uti got cleared post amikacin administration but I can see turbidity and epithelial cells in my urine. This was after 3months of antibiotic treatment.My CRP value is 16.5. My ct scan report says prominent mesenteric lymph nodes associated with fat stranding/mesentric haziness,  suggestive of mesenteric panniculitis. My sonography report says atypical uti, whitish and turbid urine and free-floating echoes in the bladder-to correlate for possible cystitis, mild hepatomegaly with grade one fatty liver. Mean platelet count is 12.7, and red cell distribution width is 15.7 whereas my urine culture for e.coli is negative now. I got loose stools for 15days and abdominal pain on both sides post-amikacin injection. Should I get tested for fungus or other organisms causing STI. Please clarify is everything normal or needs immediate attention. I am on  probiotics and cranberry tablets now.