The long arm of the Y chromosome (Yq) contains many ampliconic and palindromic sequences making it predisposed to self-recombination during spermatogenesis and hence susceptible to intra-chromosomal deletions. Such deletions lead to copy number variation in genes of the Y chromosome resulting in male infertility. But ur case is different so read below.
Next Steps
The major Y chromosomal polymorphisms are classified as follows: pericentric inversion of the constitutive heterochromatin of the long arm (inv qh); enlarged heterochromatic region of the long arm (Yqh+); and small or deficient heterochromatic region in the long arm (Yqh-).
Health Tips
so long Y chromosome may therefore be considered as a normal variant.